YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85014227, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCIILLDLL SRNKQTLKYF PMGIMLDKRT LGIIRLATIS RVFYMGISYV ASLLLPRFDK  60
   61 STELVPSSSC MKFLLSWDAI HFLEIMERGY KRAHAAAFFP LLPYVSRCIN KLLPTEPHTT 120
  121 GVLVSCTASV LSSALLYIIS RRRYGDKMAR MGCVLFIFNP ASIVYTAMYS ESLFMLLFLL 180
  181 GIYFIENNDT IRGTLFLSLC GLCRSNSILF APFVMYPFNR YVFIRIAVVL LPLAAFQYYS 240
  241 LLMINRARNA HEIFIPYSHI QKTFWEQGLF RFFTFKNIPN VFVGLPFILI SLYVLWEYWT 300
  301 KRHRGHKKAP LNTQRFSTDM CAVILLIQTL ITIFLIHWNM HFRFVSFNPL IYWTLAEKYY 360
  361 TIKSGLWKRV LFRFFFGFGI AYAVLFGCFY PPC

Type	Start	End	Confidence
Cytoplasmic	1	31	0.90
Transmembrane Helix	32	55	0.71
Non-Cytoplasmic	56	118	0.80
Transmembrane Helix	119	140	0.91
Cytoplasmic	141	151	0.86
Transmembrane Helix	152	178	0.74
Non-Cytoplasmic	179	190	0.74
Transmembrane Helix	191	214	0.84
Cytoplasmic	215	220	0.86
Transmembrane Helix	221	241	0.92
Non-Cytoplasmic	242	277	0.91
Transmembrane Helix	278	299	0.89
Cytoplasmic	300	315	0.94
Transmembrane Helix	316	338	0.88
Non-Cytoplasmic	339	369	0.57
Transmembrane Helix	370	390	0.94
Cytoplasmic	391	393	0.44