YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19074992
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIPQMNNT FLLGQMLRVP PITRYMTLLI SAVALLVYVD AVSPYSLYYS PLFLKRLEIW  60
   61 RVFTSFLYFG KPTLDMFMHV VFLYRYSRML EEGCVNTSEY FWLILVISSV LFAISNIYGI 120
  121 SALGTSFSAT ITYIWTKRNP RAIVQIFGFI SFPAFYLPFI LPGFMLLSRR SISIDDVLGI 180
  181 VVGHLFHYFK DVYPRWGRDI LSTPCWVKKL FNEHPSSCCK ARKGITIREG RERHERNMGY 240
  241 SNASTTSGDS MASLTDMADT KSSTENSAVT EESQCCAESF KDSSVVSSQK SMAVSTVVGS 300
  301 STEAKNNYLD FTEALCDKEV VAEQNPESQS NEEWDEKWGD SDNESECS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.79
Transmembrane Helix	21	42	0.89
Non-Cytoplasmic	43	66	0.67
Transmembrane Helix	67	84	0.66
Cytoplasmic	85	99	0.45
Transmembrane Helix	100	125	0.81
Non-Cytoplasmic	126	141	0.43
Transmembrane Helix	142	165	0.88
Cytoplasmic	166	348	0.49