YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19074827
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNVFITGSL CLTVYLTSNM DVLRSNEAPS VGMNFSSATL VVGGVFVMKE VVSWMINLKK  60
   61 MISIFYMYRY VLSGDMEKKT RFRDIVEGVI KLEKEIHNRD LRREDVRGIV SRGNLLVLLI 120
  121 MKKFPSIFHP TCSRFFLYIL HAYVHKIEEG PVEELGNEIR VVSVVAFILS PVISIFLILY 180
  181 YIARIIEKSQ SSIFYVFRKA HRPSFKYFMS KKDEFPHETQ KRIRKGTRYL NAFFLSKKRD 240
  241 CIVGICSAIS FFLSCMIFLV VYLILNTILV SRPSLNGVLY QDISLLGKTT NVMYLSYFIG 300
  301 GISCCLRCLS FDYATTNRRR MFVKWCVLME QKSLVEYSGN RGYLTALISK FFVPRIYLFL 360
  361 VEIISPFFVP FQLERLRARL ERIHIMLNSM DELEEHDTET QGGRASILDL

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.49
Transmembrane Helix	35	52	0.56
Cytoplasmic	53	124	0.67
Transmembrane Helix	125	142	0.54
Non-Cytoplasmic	143	160	0.89
Transmembrane Helix	161	183	0.91
Cytoplasmic	184	241	0.98
Transmembrane Helix	242	265	0.92
Non-Cytoplasmic	266	292	0.91
Transmembrane Helix	293	311	0.91
Cytoplasmic	312	350	0.88
Transmembrane Helix	351	371	0.60
Non-Cytoplasmic	372	410	0.63