YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19074555, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEDCNKQKV YLTDISREPN AGGRKQARIE LRALKDAYAL KIEPDMMPKE ESTVPDTKLF  60
   61 RVTAYCTADG YDLKNLYKYL KKNSLCNKVS MYFGECLYTL MNFKGSEERH DCFFYEYGVV 120
  121 VCWGMSEAQE SMIVKLVEKY EENAHQPSEV EIESFKYGIT GNPFIINDVI YLNSENHFTK 180
  181 MVISIAIAQS VKLDYFENLV DNTIDAVKEF PEEVEREGKV SKNKREILKM IGKLHRLRFN 240
  241 LNLGSNILDE PEFVWDYPAF SSLYETCKRY LDIKPRAELL NRRCDVINGI LEILNENTNR 300
  301 SSIEKFEVVL IVIILSNVVL IISQMIEMYI RLRP

Type	Start	End	Confidence
Non-Cytoplasmic	1	307	0.86
Transmembrane Helix	308	328	0.86
Cytoplasmic	329	334	0.67