YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19173608
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.88
Transmembrane Helix	20	38	0.85
Non-Cytoplasmic	39	62	0.72
Transmembrane Helix	63	79	0.83
Cytoplasmic	80	90	0.93
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	121	0.82
Transmembrane Helix	122	143	0.90
Cytoplasmic	144	154	0.80
Transmembrane Helix	155	175	0.92
Non-Cytoplasmic	176	181	0.93
Transmembrane Helix	182	202	0.90
Cytoplasmic	203	207	0.86
Transmembrane Helix	208	231	0.79
Non-Cytoplasmic	232	247	0.85
Transmembrane Helix	248	268	0.86
Cytoplasmic	269	276	0.92
Transmembrane Helix	277	297	0.90
Non-Cytoplasmic	298	307	0.80
Transmembrane Helix	308	327	0.93
Cytoplasmic	328	336	0.76
Transmembrane Helix	337	359	0.85
Non-Cytoplasmic	360	372	0.79
Transmembrane Helix	373	394	0.88
Cytoplasmic	395	408	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKPCVQGPF SMRNTNELEL LQVTGITVLS LVVYSSGYKK SILNDFLFCI VPQYCAIVFP  60
   61 DRIWGLYLCL AMLLNYSGLR KPEGNKSTEV VGYLRFAISV ITVIAIYAVD FSVFEKRLGK 120
  121 SHFFGISMMD IGVGSFIYNS GIVGYKARSK RHIRSYLILV LLGFVRCFTV RWFNISVNPR 180
  181 EYGIYINFYF LLALVNFIYS LIRSRYNFLL GLLVVTVYEI ILKFSGLTSF IFSDKRETFL 240
  241 EKNKEGLVAT VPYISILLMT TEVGRICFSE DKTRKKAWKV LGMTALFGCL YTVFNFSSEG 300
  301 SRRLGNGAFV FWILALHSFH IGMYLLFEST IALYNPLTAV FCSSNMMFVF LFSNLIVLFG 360
  361 NVFFDLKSFS TPVAHLNLLS YLVAVFSIPT LLTSRFDLRW MGLGYRSR