YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28143946
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKACSLVA SSLPRCSSSA APTIREAAVV AAKRAQENGL GKPLLYGIGT LLVMPLRTLH  60
   61 GVGRMFGAGR FLCNMTSVSS SLQIELVPCL QDNYAYILHD VDTGTVGVVD PSEATPIINA 120
  121 LEKRNQNLTY ILNTHHHYDH TGGNLELKAK YGAKVIGSAK DRDRIPGIDI TLSEGDTWMF 180
  181 AGHQVLVMET PGHTSGHVCY HFPGSGAIFT GDTLFSLSCG KLFEGTPQQM YSSLQKIIAL 240
  241 PDETRVYCGH EYTLSNSKFA LSIEPGNKDL QEYAANAADL RKRNTPTVPT TIGREKQCNP 300
  301 FLRTSSPEIK NTLSIPDHFD DARVLEVVRR AKDNF

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	335	0.99