YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51859277
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCISDFFTY ETTKSVVVKS WTIGIINRAV QLLIISYFVG WVFLHEKAYQ VRDTAIESSV  60
   61 VTKVKGFGRY ANRVMDVSDY VTPPQGTSVF VIITKMIVTE NQMQGFCPEN EEKYRCVSDS 120
  121 QCGPERFPGI LTGRCVNYSS VLRTCEIQGW CPTEVDTVEM PIMMEAENFT IFIKNSIRFP 180
  181 LFNFEKGNLL PNLTDKDIKR CRFHPEKAPF CPILRVGDVV KFAGQDFAKL ARTGGVLGIK 240
  241 IGWVCDLDKA WDQCIPKYSF TRLDGVSEKS SVSPGYNFRF AKYYKMENGS EYRTLLKAFG 300
  301 IRFDVLVYGN AGKFNIIPTI ISSVAAFTSV GVGTVLCDII LLNFLKGADH YKARKFEEVT 360
  361 ETTLKGTAST NPVFASDQAT VEKQSTDSGA YSIGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	323	0.86
Transmembrane Helix	324	345	0.61
Cytoplasmic	346	395	0.63