YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15428578
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAGKVIKC RAAVAWEPKA PLMMEEIEVA PPQEGEIRIK VIATGLCHTD LYHLVDGDKR  60
   61 GFPVVLGHES AGVVESVGPG VTDYKPGDKV IPLFLSQCGK CKFCKCPKTN LCESSWATKY 120
  121 HDIMAEPTSR FTCRGQTILQ FMGTSTFSEY TVINQNAVAK IDENAPLDRV FLLGCGITTG 180
  181 YGAAVNTAGV TPGSVCAVFG LGAVGLAAVM GCKNAGASRI FAVDINEKKF EKAKVFGATD 240
  241 FLNPKAFNKP ISEVLIEMTN GGGVDFSIEC TGNTEVMRSA LESCAKGWGV SVVVGWTNVQ 300
  301 DFSAKPIQLI YGKTWKGSLF GGFKCKDSVP KLVRDYMSGK IMLDEFITHK MNLEQVNDAI 360
  361 NLMKTGQGIR TIMTVSK

Type	Start	End	Confidence
Cytoplasmic	1	168	0.56
Transmembrane Helix	169	185	0.51
Non-Cytoplasmic	186	194	0.70
Transmembrane Helix	195	212	0.56
Cytoplasmic	213	377	0.56