YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K1C24_RAT
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFCSAQKGSC SSRVSSSGAV GSRGCTGSGS SYGLGGGSAW GFQGSSSSWG LSGGSKGSIG  60
   61 GGFSSCSVRG GFGAGSSFGG GSGFGGGSSG GVSSYGGSLG GGLGGIGGYD GGLLSGSEKQ 120
  121 TMQGLNDRLA NYLDKVRALE EANTDLETKI KDWYGRHGSG KDGPGRDYSQ YCSVIEDLKN 180
  181 QIISATCENA RLALQIDNAR LAADDFRMKY EHELCLRQSL EADINGLRKV LDEMTMTRCD 240
  241 LEMQIEGLTE ELVFLRKNHE EEMKCLQGSS GGDVTVEMNA TPGTDLTKLL NDMRAQYEAM 300
  301 AEQNRQEAEK QFNERSACLQ AQISTDAGAA NCAKSEVMEL RRTVQTLEIE LQSQLALKCS 360
  361 LEGTLADTEA RYVAQLSGIQ TQISSLEEQL SQIRGETQCQ SAEYECLLDI KTRLEQEIET 420
  421 YRRLLNGDGG GCDYRNLVSR QVVLNDSNFG SCSGQEKDPS KTRVTKTIIE EVVDGKVVSS 480
  481 QVSNISEVKI K

Type	Start	End	Confidence
Cytoplasmic	1	19	0.59
Transmembrane Helix	20	42	0.48
Non-Cytoplasmic	43	491	0.79