YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM9S1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	32	0.90
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	235	0.99
Transmembrane Helix	236	258	0.93
Cytoplasmic	259	306	0.95
Transmembrane Helix	307	330	0.91
Non-Cytoplasmic	331	339	0.79
Transmembrane Helix	340	362	0.88
Cytoplasmic	363	371	0.87
Transmembrane Helix	372	394	0.90
Non-Cytoplasmic	395	410	0.86
Transmembrane Helix	411	433	0.91
Cytoplasmic	434	453	0.93
Transmembrane Helix	454	473	0.66
Non-Cytoplasmic	474	480	0.60
Transmembrane Helix	481	505	0.91
Cytoplasmic	506	513	0.66
Transmembrane Helix	514	536	0.92
Non-Cytoplasmic	537	552	0.67
Transmembrane Helix	553	579	0.78
Cytoplasmic	580	589	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVLGHPRSW SCHCLPVLIL LLGIGHGPRV EGVTHYKPGD PVILYVNKVG PYHNPQETYH  60
   61 YYQLPVCCPE KIRHKSLSLG EVLDGDRMAE SLYEIRFREN VEKRILCHMQ LSSAQVEQLR 120
  121 QAIEELYYFE FVVDDLPIRG FVGYMEESGF LPHSHKIGLW THLDFHLEFH GDRIIFANVS 180
  181 VRDVKPHSLD GLRSDELLGL THTYSVRWSE TSVEHRSDRR RADDGGFFPR TLEIHWLSII 240
  241 NSMVLVFLLV GFVAVILMRV LRNDLARYNL DEETSSGGSS DDFDQGDNGW KIIHTDVFRF 300
  301 PPCRGLLCAV LGVGAQFLAL GTGIIVMALL GMFNVHRHGA INSAAILLYA LTCCISGYVS 360
  361 SHFYRQIGGE RWVWNIILTT SLFSVPFFLT WSVVNSVHWA NGSTQALPVT TILLLLTVWL 420
  421 LVGFPLTVIG GIFGKNNASP FDAPCRTKNI AREIPPQPCA ISVELYYIFA TVWGREQYTL 480
  481 YGILFFVFAI LLSVGACISI ALTYFQLSGE DYRWWWRSVL SVGSTGLFIF LYSVFYYARR 540
  541 SNMSGAVQTV EFFGYSLLTG YVFFLMLGTI SFFSSLKFIR YIYVNLKMD