YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68418690, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALMKVKFDL KKRVKLAQML WLMYWFSVMA GVLVFSMGLF FKIELRKRSE LMDNNESHFV  60
   61 PNILIGVGLL ACCLNAFGGK VCYDSLDSSK YAKWKSIMTP FLICCLVFNF LLIVTAAMCF 120
  121 AMRIPLEFTL AEGLKNGMKY YKDTDTPGRC YMKRTLDLMQ MEFRCCGNNN YKDWFEIQWV 180
  181 SNRYLDFSAK EVKDRISSNV DGKYLMDGVP FSCCNPSSPR PCIQQQITNN SAHYSYDHYT 240
  241 EDLNIWKRGC RDALVSYYGG MMNTIGVLVL LVTLLQSAVM IGLQYINTSL STLVNPEDPE 300
  301 SESEGWILEK TVKETFTDIM AKMKAMGKGN QVDEGTNEEA AATAS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	41	0.97
Non-Cytoplasmic	42	58	0.77
Transmembrane Helix	59	79	0.90
Cytoplasmic	80	98	0.68
Transmembrane Helix	99	121	0.92
Non-Cytoplasmic	122	263	0.78
Transmembrane Helix	264	283	0.61
Cytoplasmic	284	345	0.51