YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APG_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG  60
   61 GAANHHHHDD DDDDDDDVPW LHYHPVVDDD DDADADTAPL PPDYCAALLS GLSDHLPPPA 120
  121 AAASRVDPDP CSSSHGAVVP STSAAAAKQA RTSGGGGGGV MNFTFFSRPL QQRPSGGETA 180
  181 SASASAAATS TVPVESTVVQ AATNRLRSTP LFSDQRMAWL HPPKPSPRAA APPPPPPLAP 240
  241 TTRHRLDTAA ATATVAQRLP PSEARAPDAP PPAATATATT SSVCSGNGDR RQLNWRDSHN 300
  301 NQSAEWSASQ DELDLDDELA GVHRRSAARS SKRSRTAEVH NLSERRRRDR INEKMRALQE 360
  361 LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM MSMGTGMFVP PMMLPAAAAA MQHHHMQMQQ 420
  421 MAGPMAAAAH FPHLGAAAAM GLAGFGMPAA AQFPCPMFPA APPMSMFAPP PPPPPFPHAA 480
  481 ATAVEQTPSP PGAADAGNAP AVKQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	389	0.57
Transmembrane Helix	390	411	0.88
Cytoplasmic	412	428	0.49
Transmembrane Helix	429	451	0.85
Non-Cytoplasmic	452	505	0.53