YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6957723, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREAQLGGHT LRSHGMTVAR THMHDWIILV LLVILECVLL IIHPFYRFVG KDMMTDLSYP  60
   61 LKSNTVPIWS VPVYAMLLPL VIFIFIYFRR RDVYDLHHAV LGLLYSVLVT AVLTDAIKNA 120
  121 VGRPRPDFFW RCFPDGKALY DSLGDVICHG DKSVIREGHK SFPSGHTSWS FSGLGFLSLY 180
  181 LSGKIQAFDG KGHVAKLCIV ILPLLFAALV GISRVDDYWH HWQDVFAGGL LGLAISTICY 240
  241 LQFFPPPYHT EGWGPYAYFQ VLEAARVQGA ANGAVQQPPP QVNNGEEEDG GFMGLHLVDN 300
  301 PTMRREEDVE TGRG

Type	Start	End	Confidence
Cytoplasmic	1	25	0.88
Transmembrane Helix	26	46	0.94
Non-Cytoplasmic	47	65	0.92
Transmembrane Helix	66	88	0.92
Cytoplasmic	89	95	0.87
Transmembrane Helix	96	117	0.84
Non-Cytoplasmic	118	164	0.87
Transmembrane Helix	165	183	0.88
Cytoplasmic	184	192	0.75
Transmembrane Helix	193	213	0.92
Non-Cytoplasmic	214	224	0.71
Transmembrane Helix	225	244	0.94
Cytoplasmic	245	314	0.92