YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16131298\|ref\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMITSFANP RVAQAFVDYM ATQGVILTIQ QHNQSDVWLA DESQAERVRA DVARFLENPA  60
   61 DPRYLAASWQ AGHTGSGLHY RRYPFFAALR ERAGPVTWVM MIACVVVFIA MQILGDQEVM 120
  121 LWLAWPFDPT LKFEFWRYFT HALMHFSLMH ILFNLLWWWY LGGAVEKRLG SGKLIVITLI 180
  181 SALLSGYVQQ KFSGPWFGGL SGVVYALMGY VWLRGERDPQ SGIYLQRGLI IFALIWIVAG 240
  241 WFDLFGMSMA NGAHIAGLAV GLAMAFVDSL NARKRK

Type	Start	End	Confidence
Cytoplasmic	1	94	0.97
Transmembrane Helix	95	115	0.94
Non-Cytoplasmic	116	140	0.91
Transmembrane Helix	141	161	0.93
Cytoplasmic	162	168	0.95
Transmembrane Helix	169	188	0.94
Non-Cytoplasmic	189	194	0.80
Transmembrane Helix	195	213	0.96
Cytoplasmic	214	222	0.91
Transmembrane Helix	223	245	0.89
Non-Cytoplasmic	246	251	0.79
Transmembrane Helix	252	272	0.91
Cytoplasmic	273	276	0.97