YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24417414
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGKQSSQP EKGTSRILSL TVLFIAFCGF SFYLGGIFCS ERDKIVAKDV TRTTTKAVAS  60
   61 PKEPTATPIQ IKSVSFPECG SEFQDYTPCT DPKRWKKYGV HRLSFLERHC PPVYEKNECL 120
  121 IPPPDGYKPP IRWPKSREQC WYRNVPYDWI NKQKSNQHWL KKEGDKFHFP GGGTMFPRGV 180
  181 SHYVDLMQDL IPEMKDGTVR TAIDTGCGVA SWGGDLLDRG ILSLSLAPRD NHEAQVQFAL 240
  241 ERGIPAILGI ISTQRLPFPS NAFDMAHCSR CLIPWTEFGG IYLLEIHRIV RPGGFWVLSG 300
  301 PPVNYNRRWR GWNTTMEDQK SDYNKLQSLL TSMCFKKYAQ KDDIAVWQKL SDKSCYDKIA 360
  361 KNMEAYPPKC DDSIEPDSAW YTPLRPCVVA PTPKVKKSGL GSIPKWPERL HVAPERIGDV 420
  421 HGREVPNSLK HDDGKWKNRV KHYKKVLPAL GTDKIRNVMD MNTVYEGFSA ALIEDPIWVM 480
  481 NVVSSYSANS LPVVFDRGLI GTYHDWCEAF STYPRTYDLL HLDSLFTLES HRCEMKYILL 540
  541 EMDRILRPSG YVIIRESSYF MDAITTLAKG IRWSCRREET EYAVKSEKIL VCQKKLWFSS 600
  601 NQTS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle