YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24417348
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGASSVSSV SSICSSNVSL IPTGPQVFIN FRGKDLRKGF MSFLTPALKK EKINVFIDEQ  60
   61 EERGKYLISL FDTIGESKIA LVIFSEGYCE SRWCMDELVQ IKEYMDQNRL VIIPIFYRID 120
  121 LDVVKHLKGK FGNNFLDLVD KYHPEPKKLQ KWMEALFSVC ELFSLILPKN SDISDRDFVK 180
  181 SIVKAVKKVQ RNFSQERNGV NEYQDFSVPP SKLTITMHES PNEEAVQVTV LNEFYQMKNQ 240
  241 SPVPSYEFKF WVDLTRPKGN VFMIDARDLS IAWSEDSNHW TWLTLANQNS NESVMEIAFL 300
  301 KSASWLDVAG KFDTRYLTPR TRYEVVFVVK LEYTFEWETL VKLKLDLPNT WEKPQEQNVD 360
  361 MFDYISDQWL DIPVGEFTTS KKNVGEISFA MYEHECQLWK SGLFVKGVTI RPKY

Type	Start	End	Confidence
Signal Peptide	1	16	0.54
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	414	0.99