YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88658394, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVRPLSPH LQIYKVVYKL SIMHRFTGMI LFLGLLVLSW GFILSFLCPQ VVYRICSFFC  60
   61 NSYVSLYSLK LITFIWLNVL CYHYMNGIRH IFWDLGLGLS KSAVRTTGVV VVFLCLVSSF 120
  121 ILYSFFLS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	44	0.85
Non-Cytoplasmic	45	65	0.77
Transmembrane Helix	66	86	0.86
Cytoplasmic	87	102	0.85
Transmembrane Helix	103	126	0.89
Non-Cytoplasmic	127	128	0.78