YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10567524
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLNASQQAPG GGVEIRSRPS WLASTLAFIL IFTIVVDILG NLLVILSVYR NKKLRNAGNI  60
   61 FVASLAVADL VVAIYPFPWA LTSILNNGWN LGYLHCQVSA FLMGLSVIGS VFNITGIAMN 120
  121 RYCYICHSLK YDRIYSNKNS LCYVFLIWTL TLIAIMPNLQ TGTLQYDPRI YSCTFTQSVS 180
  181 SAYTIALVVF HFVVPMIIVT FCYLRIWILV LQVRRRVKPD SKPKLKPQDF RNFVTMFVVF 240
  241 VLFALCWAPL NFIGLIVASD PATMAPRIPE WLFVASYYLA YFNSCLNAII YGLLNQNFRK 300
  301 EYKRIIISLC TAKMFFVDSS NDAADK

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.98
Transmembrane Helix	21	46	0.84
Cytoplasmic	47	56	0.85
Transmembrane Helix	57	79	0.90
Non-Cytoplasmic	80	97	0.85
Transmembrane Helix	98	119	0.90
Cytoplasmic	120	138	0.87
Transmembrane Helix	139	159	0.89
Non-Cytoplasmic	160	186	0.89
Transmembrane Helix	187	209	0.92
Cytoplasmic	210	231	0.93
Transmembrane Helix	232	255	0.89
Non-Cytoplasmic	256	273	0.89
Transmembrane Helix	274	294	0.93
Cytoplasmic	295	326	0.95