YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLP9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMDLSKVTL DIFTKLEQKW LSHCDSSRKT RILSIDGGGT TGIVAAASIL HLEHQIRLQT  60
   61 GDPHAHISDF FDIVAGTGIG GILAALLVAD DGSGRPMFTA RDAVKFVAEK NSELFEIRYT 120
  121 GVFRRNKRYS GKSMERVLET AFRREDGKVL TMKDTCKPLL VPCYDLKTSA PFVFSRAGAS 180
  181 ESPSFDFELW KVCRATSATP SLFKPFSVVS VDGKTSCSAV DGGLVMNNPT AAAVTHVLHN 240
  241 KRDFPSVNGV DDLLVLSLGN GPSTMSSSPG RKLRRNGDYS TSSVVDIVVD GVSDTVDQML 300
  301 GNAFCWNRTD YVRIQANGLT SGGAEELLKE RGVETAPFGV KRILTESNGE RIEGFVQRLV 360
  361 ASGKSSLPPS PCKESAVNPL ADGR

Type	Start	End	Confidence
Cytoplasmic	1	31	0.77
Transmembrane Helix	32	52	0.69
Non-Cytoplasmic	53	69	0.85
Transmembrane Helix	70	89	0.63
Cytoplasmic	90	384	0.60