YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24030315, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL  60
   61 PGNSGISRSA SLVSSTLQRW VRPFSAETGD TVEAVVPHMG ESITDGTLAT FLKKPGERVQ 120
  121 ADEAIAQIET DKVTIDIASP ASGVIQEFLV NEGDTVEPGT KVAIISKSED TASQVTPSQK 180
  181 IPETTDTKPS PPAEDKQKPR VESAPVAEKP KAPSSPPPPK QSAKEPQLPP KERERRVPMT 240
  241 RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFYEKHGVKL GLMSGFIKAA 300
  301 VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRGADKMNF AEIEKTINSL 360
  361 AKKANEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ SAILGMHSIV SRPMVVGGSV 420
  421 VPRPMMYVAL TYDHRLIDGR EAVYFLRRVK DVVEDPQRLL LDI

Type	Start	End	Confidence
Signal Peptide	1	42	0.76
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	463	0.99