YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGL1A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK  60
   61 ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL QALQSFYYDG KAIMSNEEFD 120
  121 NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG 180
  181 PRCSLRSKKV YSDLAVDYFK MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI 240
  241 FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC 300
  301 TNCGTAMVYD SGSRLITLPE GSQA

Type	Start	End	Confidence
Cytoplasmic	1	197	0.95
Transmembrane Helix	198	219	0.87
Non-Cytoplasmic	220	238	0.90
Transmembrane Helix	239	261	0.89
Cytoplasmic	262	324	0.97