YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPA3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYIYRDTKI TTKSTIPFLI FFLFCFSNLS MATLKHKPVN LVFYVYNLII IFSSHSSTAE  60
   61 LRRLLQPSKT DGTVSFLVIG DWGRRGSYNQ SQVALQMGEI GEKLDIDFVI STGDNFYDNG 120
  121 LTSLHDPLFQ DSFTNIYTAP SLQKPWYSVL GNHDYRGDVR AQLSPMLRAL DNRWVCMRSF 180
  181 IVNAEIVDLF FVDTTPFVDK YFIQPNKHVY DWSGVLPRQT YLNNLLKELD VALRESVAKW 240
  241 KIVIGHHTIK SAGHHGNTIE LEKHLLPILQ ANEVDLYVNG HDHCLEHISS VDSNIQFMTS 300
  301 GGGSKAWKGG DVNYVEPEEM RFYYDGQGFM SVHVSEAELR VVFYDVFGHV LHHWKKTYKE 360
  361 ALYFAS

Type	Start	End	Confidence
Cytoplasmic	1	13	0.38
Transmembrane Helix	14	33	0.50
Non-Cytoplasmic	34	366	0.76