YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40036979
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIRGATRMT RTVMGHMGPR YFSTAILRND AGTGVMTGAA GFMHGVPVNP SEKVLWHIPV  60
   61 MGSRSASTMA LNDKQHDKKV ENGGTAASGG GDGGDEKSVV SYWGVPPSKV TKEDGTEWKW 120
  121 NCFRPWETYK ADLTIDLTKH HAPTTFLDKF AYWTVKALRY PTDIFFQRRY GCRAMMLETV 180
  181 AAVPGMVGGM LLHCKSLRRF EQSGGWIKAL LEEAENERMH LMTFMEVAKP NWYERALVFA 240
  241 VQGVFFNAYF VTYLVSPKLA HRIVGYLEEE AIHSYTEFLK ELDKGNIENV PAPAIAIDYW 300
  301 RLPKDSTLRD VVLVVRADEA HHRDVNHFAS DIHYQGQQLK DSPAPIGYH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.65
Transmembrane Helix	21	42	0.32
Non-Cytoplasmic	43	349	0.63