YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TA2R4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWELYAFVF AASVVFNFVG IVANLFIIVI ISKTWVKSHK ISSSDKILFS LAITRFLTLG  60
   61 LFLLNTVYIA TNTGRSVYFS TFFLLCWKFL DSNSLWLVTF LNCLYCVKIT HFQHPVFLLL 120
  121 KRTVSMKTTS LLLACLLISA FTTLLYFVLT QISRFPEHII GRNDTLFDVS DGILTLAASL 180
  181 ILSSLLQFLL NVTFASLLIH SLRRHVQKMQ RNRSSFWNPQ TEAHVGAMRL MICFLVLYIP 240
  241 YSIAALLYFP SYMRKNLRAQ AACMIITAAY PPGHSILLII THHKLKAKAK KICCFYKLRD 300
  301 FVSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.90
Transmembrane Helix	8	31	0.92
Cytoplasmic	32	50	0.86
Transmembrane Helix	51	71	0.93
Non-Cytoplasmic	72	91	0.84
Transmembrane Helix	92	112	0.84
Cytoplasmic	113	128	0.89
Transmembrane Helix	129	150	0.92
Non-Cytoplasmic	151	175	0.92
Transmembrane Helix	176	202	0.83
Cytoplasmic	203	224	0.94
Transmembrane Helix	225	249	0.83
Non-Cytoplasmic	250	258	0.84
Transmembrane Helix	259	281	0.88
Cytoplasmic	282	304	0.93