YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16225900
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTVPAKVVLT PYKPEPGNQC QISQEYYDKK AQMCCAKCPP GQYAKHFCNK TSDTVCADCA  60
   61 AGMFTQVWNH LHTCLSCSSS CSDDQVETHN CTKKQNRVCA CNADSYCALK LHSGNCRQCM 120
  121 KLSKCGPGFG VARSRTSNGN VICSACAPGT FSDTTSSTDV CRPHRICSIL AIPGNASTDA 180
  181 VCASESPTPS AVPRTIYVSQ PEPTRSQPMD QEPGPSQTPH IPVSLGSTPI IEPSITGGIS 240
  241 LPIGLIVGLT TLGLLMLGLA NCFILVQRKK KPSCLQRETM VPHLPDEKSQ DAVGLEQQHL 300
  301 LTTAPSSSSS SLESSASAGD RRAPPGVIPQ ARVTAEAQGS QEACAGSRSS DSSHGSHGTH 360
  361 VNVTCIVNVC SSSDHSSQCS SQASTTVGDP DANPSGSPKD EQVPFSQEEC PSQSQWETTE 420
  421 TLQNHDKPFP LGV

Type	Start	End	Confidence
Non-Cytoplasmic	1	240	0.88
Transmembrane Helix	241	265	0.85
Cytoplasmic	266	433	0.87