YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18031651
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTADSEANAT NWYNTNESLY TTELNHRWIS GSSTIQPEES LYGTDLPTYQ HCIATRNSFA  60
   61 DLFTVVLYGF VCIIGLFGNT LVIYVVLRFS KMQTVTNIYI LNLAVADECF LIGIPFLLYT 120
  121 MRICSWRFGE FMCKAYMVST SITSFTSSIF LLIMSADRYI AVCHPISSPR YRTLHIAKVV 180
  181 SAIAWSTSAV LMLPVILYAS TVEQEDGINY SCNIMWPDAY KKHSGTTFIL YTFFLGFATP 240
  241 LCFILSFYYL VIRKLRSVGP KPGTKSKEKR RAHRKVTRLV LTVISVYILC WLPHWISQVA 300
  301 LIHSNPAQRD LSRLEILIFL LLGALVYSNS AVNPILYAFL SENFRKSFFK AFTCMNKQDI 360
  361 NAQLQLEPSV FTKQGSKKRG GSKRLLTSNP QIPPLLPLNA GNNNSSTTTS STTTAEKTGT 420
  421 TGTQKSCNSN GKVTAPPENL IICLSEQQEA FCTTARRGSG AVQQTDL

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.87
Transmembrane Helix	65	87	0.93
Cytoplasmic	88	97	0.78
Transmembrane Helix	98	119	0.90
Non-Cytoplasmic	120	134	0.80
Transmembrane Helix	135	156	0.82
Cytoplasmic	157	175	0.84
Transmembrane Helix	176	198	0.88
Non-Cytoplasmic	199	228	0.93
Transmembrane Helix	229	252	0.90
Cytoplasmic	253	275	0.97
Transmembrane Helix	276	296	0.93
Non-Cytoplasmic	297	315	0.92
Transmembrane Helix	316	340	0.88
Cytoplasmic	341	467	0.96