YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17223726
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLTSLITPT EQLAVAPNGT TLHQLESVES ESYPSINGTQ NETMVTSVRP HLDHRNRPTQ  60
   61 QNGSHYLEYD DDGPDCSYSY NFILKLITMI LYALVCIIGL FGNTLVIYVV MRFSKMQTVT 120
  121 NIYILNLAIA DECFLIGIPF LLYTMQVGNW PFGNYMCKAY MVSTSITSFT SSIFLLIMSA 180
  181 DRYIAVCHPI SSPRYRTPFV SKLVSAFAWM TSVLLMLPVI LFASTVQSSN GNVSCNIEWP 240
  241 DTQNSHTDST FILYSLVLGF ATPLTFILVF YCLVIRKLHT VGPKHKSKEK KRSHRKVTKL 300
  301 VLTVISAYIF CWLPHWISQV ALISSAPQRC ASRLELAVFL ACGCLSYSNS AMNPILYAFL 360
  361 SDNFKKSFMK ACTCAARKDV NAQLQLENSF FPKFGKGRQS ERLLGGNGKG GAQRGALTKK 420
  421 KCLATRNNNA PMATTTTTTT TTTGTDAVTC LQPPVHQVPA EIQVGNPATV LVVNAETNNC 480
  481 KPPVLHTDL

Type	Start	End	Confidence
Non-Cytoplasmic	1	88	0.96
Transmembrane Helix	89	110	0.95
Cytoplasmic	111	121	0.84
Transmembrane Helix	122	143	0.92
Non-Cytoplasmic	144	158	0.89
Transmembrane Helix	159	180	0.86
Cytoplasmic	181	198	0.87
Transmembrane Helix	199	223	0.86
Non-Cytoplasmic	224	251	0.94
Transmembrane Helix	252	275	0.92
Cytoplasmic	276	295	0.96
Transmembrane Helix	296	317	0.93
Non-Cytoplasmic	318	336	0.92
Transmembrane Helix	337	360	0.47
Cytoplasmic	361	489	0.52