YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16797781
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKAPGMMDA PHIPTLGKPP IFQELGNTGR RALWVVAILM LVSSLIFYIL GARVVVQKRL  60
   61 FHVLTSLVTT ISFLAYFAMA TGEGIGYNVA SIRQEHKNAP ATVEEVHRQV FWVRWLNWSL 120
  121 TFTIILINLA LLAGMNGASL LISVAANITM FVTGLISVFS EHGTRWAWFT ISCLSYLTVV 180
  181 YHTGFHGRRA TLAKDNQTRA FYSSIAGYFL VLLLIYPIIW AASSNTRRMS VDAEIIIYAF 240
  241 LDILSQGVFG YWLLVSHDSM QSITLSIDGF WSNGIGNEGT IRVGDNEGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.62
Transmembrane Helix	32	52	0.94
Cytoplasmic	53	59	0.57
Transmembrane Helix	60	80	0.86
Non-Cytoplasmic	81	110	0.61
Transmembrane Helix	111	133	0.80
Cytoplasmic	134	137	0.44
Transmembrane Helix	138	159	0.82
Non-Cytoplasmic	160	165	0.53
Transmembrane Helix	166	185	0.93
Cytoplasmic	186	199	0.58
Transmembrane Helix	200	222	0.88
Non-Cytoplasmic	223	234	0.57
Transmembrane Helix	235	255	0.89
Cytoplasmic	256	289	0.60