YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16904126
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCLGYRPSL PANIIFTALF GLCALTQVAE MGIFRSYTFS IPVILGGICE VVGYVGRILL  60
   61 YDNPFSQDAF LIQICCLTIA PAFYSAAIYF CIADIVKLLG PEASRLKPHH YAWIFIPCDV 120
  121 ISLILQGAGG GIASVASQEN EDPTTGTNVM VAGLVFQVFS LLMFILLTLE FLWRVRNKRP 180
  181 KSISDESIKE KSSSRHQKFL LFGIPFALAI LCIFIRCAFR VAELSNGWTG ELIKHEDTFI 240
  241 ALEGAMIAVS AVALNISHPK LLSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.71
Transmembrane Helix	9	29	0.83
Cytoplasmic	30	37	0.63
Transmembrane Helix	38	60	0.76
Non-Cytoplasmic	61	68	0.93
Transmembrane Helix	69	92	0.93
Cytoplasmic	93	110	0.91
Transmembrane Helix	111	133	0.90
Non-Cytoplasmic	134	149	0.89
Transmembrane Helix	150	173	0.88
Cytoplasmic	174	198	0.95
Transmembrane Helix	199	219	0.96
Non-Cytoplasmic	220	238	0.91
Transmembrane Helix	239	258	0.91
Cytoplasmic	259	264	0.81