YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51556906
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGNMSVV TGKTGEKKNP LEKVPTSKPP FTVGDIKKAI PPHCFQRSLV RSFSYVVYDL  60
   61 ILVSVFYYIA ITYFHLLPSP YCYLAWPIYW ICQGCVCTGI WVIAHECGHH AFSDYQWVDD 120
  121 TVGLILHSAL MVPYFSWKYS HRRHHSNTGS LERDEVFVPK PKSQLGWYSK YLNNPPGRVM 180
  181 SLTVTLTLGW PLYLAFNVSG RHYDRFACHY DPYGPIYNDR ERLQIFLSDA GVLGAGYLLY 240
  241 RIALVKGLAW LVCMYGVPLL IVNGFLVLIT YLQHTHPSLP HYDSSEWDWL RGALATVDRD 300
  301 YGILNKVFHN ITDTHVVHHL FSTMPHYNAM EATKAVKPLL GDYYQFDGTP VFKAMWREAK 360
  361 ECIYVEKDEA SQGKGVFWYK NKL

Type	Start	End	Confidence
Cytoplasmic	1	54	0.84
Transmembrane Helix	55	77	0.89
Non-Cytoplasmic	78	84	0.71
Transmembrane Helix	85	104	0.86
Cytoplasmic	105	176	0.56
Transmembrane Helix	177	196	0.71
Non-Cytoplasmic	197	222	0.44
Transmembrane Helix	223	240	0.60
Cytoplasmic	241	247	0.55
Transmembrane Helix	248	272	0.87
Non-Cytoplasmic	273	383	0.71