YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51328580, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVVYVLST VTGYVLTSAF LLKCPSLLHR RKREAFRSRH ISHRGGAGEN LENTMAAFKH  60
   61 AVKLGTDMLE LDCHLTKDEQ VVVLHDSSLK RSTGINAYVA DVAYADLPPY LCKLGVSFKR 120
  121 DCYCEGGEDK RIPLLRDVFE AFPSTPVNID IKVNNDTLIK KVSELVIQYK RQDLTVWGNS 180
  181 SNEIVKKCHK ENPQIPILFS LPRVLLLLGL FYTGLLPFVP IKEQFLEIPM PSIVSKLKDP 240
  241 QRQTRSQRFI TWLADKVLMR KSLFDHLTGR GIQVYIWVLN DEEDFQRAFD LGATGVMTDY 300
  301 PTKLKEFMEK NNYTTTIK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.69
Transmembrane Helix	7	27	0.65
Cytoplasmic	28	198	0.78
Transmembrane Helix	199	219	0.71
Non-Cytoplasmic	220	318	0.87