YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALRL_DANRE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	149	0.99
Transmembrane Helix	150	174	0.88
Cytoplasmic	175	186	0.85
Transmembrane Helix	187	206	0.95
Non-Cytoplasmic	207	232	0.85
Transmembrane Helix	233	254	0.84
Cytoplasmic	255	259	0.92
Transmembrane Helix	260	281	0.91
Non-Cytoplasmic	282	298	0.93
Transmembrane Helix	299	321	0.92
Cytoplasmic	322	341	0.86
Transmembrane Helix	342	360	0.96
Non-Cytoplasmic	361	378	0.91
Transmembrane Helix	379	399	0.88
Cytoplasmic	400	470	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASCWTICL FLLGSVTEFI VLASPEVNES QQQHPQNVYH DIGVTRNKIV TAQFECYQKI  60
   61 MKDNSQDRRG PVCNRTWDGW LCWDDTEAGI TSEQHCPDYF QDFDPTEMVT KICTESGQWF 120
  121 LHPESNRTWT NFTRCNLHTT EGRRTAMNLF YLALIGHGLS LTSLFISLGI FFHFKSLSCQ 180
  181 RITLHKNLFF SFVLNSIITI IWLTAVANNQ ELVQQNPISC KISQFIHLYI FGCNYFWMLC 240
  241 EGIYLHTLIV VAVFAEKQHL MWYYLLGWGF PLIPATIHAV ARSYYYNDNC WISSNTSLLY 300
  301 IIHGPICAAM LVNLFFLLNI VRVLITKLKV THQAKSSLYM KAVRATLILV PLLGIQYVLL 360
  361 PYKPSGRVSA EIYDYIMHIL MHYQGLLVAT IFCFFNGEVQ AVLRRHWNQY RIQFGSTITQ 420
  421 SDALRSASYT ASSITEVQGC YSIDGHTEHL NGKNYHDFDN AIIKPENPFA