YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TTYH3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVSYAAPW WVSLLHRLPH FDLRWEATSS QFRPEDADYQ QALLLLGATA LACLALDLLF  60
   61 LLFYSFWLCC RRRKTDEHLD ADCCCTAWCV IITTLVCSAG IAVGFYGNGE TSDGIHRATY 120
  121 SLRHANRTVA GVQDRVWDTA AALNRTAEPN LQSLERQLAG RQEPLRAVQR LQTLLGTLLG 180
  181 YTAAIPFWRN PGVSLEVLAE QVDLYDWYRW LGYLGLLLLD VIICLLVLVG LIRSSKGILV 240
  241 GVCLLGVLAL VISWGALGLE LAVSVGSSDF CVDPDTFVTK MVEEHSVLSG DILQYYLACS 300
  301 PRATNPFQQK LSGSHKALVE MQDVVAELLR NVPREHPATK DPLLRVQEVL NGTEVNLQHL 360
  361 TALVDCRSLH LDYVQALTGF CYDGVEGLIY LALFSFVTAL MFSSIVCSIP HTWQQKRGPD 420
  421 DDGEEETAPG PRQAHDSLYR VHMPSLYSCG SSYGSEASIP AAAHTVSNAP VTEYMSQNAN 480
  481 FQNPRCENTP LIGRESPPPS YTSSMRAKYL ATSQPRPDSS GSGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.83
Transmembrane Helix	42	67	0.85
Cytoplasmic	68	170	0.54
Transmembrane Helix	171	185	0.54
Non-Cytoplasmic	186	209	0.89
Transmembrane Helix	210	231	0.93
Cytoplasmic	232	237	0.84
Transmembrane Helix	238	258	0.94
Non-Cytoplasmic	259	387	0.98
Transmembrane Helix	388	409	0.85
Cytoplasmic	410	524	0.89