YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28279601
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.45
Transmembrane Helix	21	47	0.57
Cytoplasmic	48	58	0.59
Transmembrane Helix	59	80	0.92
Non-Cytoplasmic	81	115	0.73
Transmembrane Helix	116	136	0.92
Cytoplasmic	137	151	0.84
Transmembrane Helix	152	170	0.97
Non-Cytoplasmic	171	177	0.81
Transmembrane Helix	178	201	0.91
Cytoplasmic	202	219	0.93
Transmembrane Helix	220	244	0.89
Non-Cytoplasmic	245	257	0.85
Transmembrane Helix	258	277	0.93
Cytoplasmic	278	286	0.83
Transmembrane Helix	287	306	0.72
Non-Cytoplasmic	307	337	0.76
Transmembrane Helix	338	359	0.87
Cytoplasmic	360	409	0.79
Transmembrane Helix	410	431	0.86
Non-Cytoplasmic	432	451	0.73
Transmembrane Helix	452	473	0.88
Cytoplasmic	474	478	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THRVHFQTRP EKYCTSPTNM GAVLGLCSMA SWIPCLCGSA PCLPCGCCPS GNNSTVTRLI  60
   61 YAFFMLLGVG IACIMLMPGM EGQLKKIPGF CEGGMGSSIP GVEGHVNCDV LVGYKAVYRV 120
  121 CFGMAMFFLL FSLIMVKVKS SQDPRAAVHN GFWFFKFAAA TAITVGAFFI PEGPFTTVWF 180
  181 YIGMAGAFCF ILIQLVLLID FAHSWNESWV EKMEEGNSRC WYAALLSATA INYALSLMSL 240
  241 VLFYVYYTHS DGCTENKVFI SINMLLCVGA SVMSILPKIQ ESQPRSGLLQ SSIVTLYTMY 300
  301 LTWSAMTNEP DRRCNPSLLG IIGLNSTSPA GQDRVVQWWD AQGIVGLILF LMCVLYSSIR 360
  361 NSSNTQVNKL TLTSDESALI EDGPAPENFE VGDGTNRAID NEKDGVTYSY SFFHFMLFLA 420
  421 SLYIMMTLTN WYSPDSNYET MTSKWPSVWV KISSSWICIS LYVWTLVAPL VLTNRDFD