YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49035698, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.90
Transmembrane Helix	7	31	0.83
Cytoplasmic	32	40	0.86
Transmembrane Helix	41	62	0.81
Non-Cytoplasmic	63	68	0.87
Transmembrane Helix	69	90	0.92
Cytoplasmic	91	99	0.78
Transmembrane Helix	100	121	0.90
Non-Cytoplasmic	122	131	0.84
Transmembrane Helix	132	152	0.91
Cytoplasmic	153	207	0.98
Transmembrane Helix	208	230	0.91
Non-Cytoplasmic	231	246	0.87
Transmembrane Helix	247	267	0.92
Cytoplasmic	268	277	0.85
Transmembrane Helix	278	301	0.87
Non-Cytoplasmic	302	307	0.78
Transmembrane Helix	308	327	0.80
Cytoplasmic	328	335	0.77
Transmembrane Helix	336	359	0.91
Non-Cytoplasmic	360	363	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGWEDVYKV IVAVVPLYFA LILGYGSVRW WKIFTREQCD AINKLVCYFT LPLFAFEFTA  60
   61 HIDPFKMNFL FIGADTLSKL IIVAVIALWA KCSSKVSYSW SITSFSLCTL TNSLVVGIPM 120
  121 VKPMYGPMGV DLVVQASVVQ AIIWLTLLLF VLEFRRTGIE GTITTLKPKA SSISNVTCEG 180
  181 EESKDVEANN IVEYTSSRLP FLQLMKRVWL KLIANPNSYG CVIGISWAFI SNRWNLELPS 240
  241 MVEGSILIMS KAGTGTAMFS MGIFMALQEK VISCGPSLTV FGLVLKFIAG PAAMAISAFI 300
  301 VGLRGDVLRI AIIQAAVPQS ITSFIFAKEY ELHAEVLSTA VIFGMIVSLP ILVAYYAILE 360
  361 FVH