YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6708125, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	59	0.89
Non-Cytoplasmic	60	135	0.96
Transmembrane Helix	136	160	0.82
Cytoplasmic	161	175	0.81
Transmembrane Helix	176	200	0.84
Non-Cytoplasmic	201	206	0.77
Transmembrane Helix	207	228	0.94
Cytoplasmic	229	239	0.83
Transmembrane Helix	240	259	0.85
Non-Cytoplasmic	260	262	0.47
Transmembrane Helix	263	286	0.53
Cytoplasmic	287	470	0.61
Transmembrane Helix	471	494	0.88
Non-Cytoplasmic	495	506	0.88
Transmembrane Helix	507	529	0.87
Cytoplasmic	530	540	0.77
Transmembrane Helix	541	563	0.82
Non-Cytoplasmic	564	574	0.80
Transmembrane Helix	575	596	0.92
Cytoplasmic	597	603	0.86
Transmembrane Helix	604	623	0.95
Non-Cytoplasmic	624	634	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALCKKTVGS VLEEWCLNEP LFGCKRHQNV RKKLRLIRII GLLVSVVAIS TFSLSISAFF  60
   61 KMETHSTVLA SSLESQKLVH GHQRTLLDFM EQNEGSTPDS PTSMKHEAEH DNATEEHSKG 120
  121 EYPEDLFSLE ERRKGAVILH VIGMIYMFIA LAIVCDEFFV PSLTVITEKL SISDDVAGAT 180
  181 FMAAGGSAPE LFTSLIGVFI SHSNVGIGTI VGSAVFNILF VIGMCALFSR EILNLTWWPL 240
  241 FRDVSFYIVD LILLIIFFLD NLIMWWESLT LLTAYFCYVT FMKFNVQVEE WVKKVLNRNK 300
  301 VEKATTGDAE GKSPTAGDKD DQTLTTKPRL QRGGSSASLH NSLMRNSIFQ LMIHTLDPLA 360
  361 EGKFKERASI LHKIAKKKCQ VEDSERQNGA ANHEKGAKVE VAVTPPSDSG PVQNGIAHNV 420
  421 DEENEEDEDQ PLSLAWPDTP RKQLTYLLVL PIVFPLWVSL PDVRNPRSRK FFPITFFGSI 480
  481 SWIAFFSYLM VWWAHQVGET IGISEEIMGL TILAAGTSIP DLITSVIVAR KGLGDMAVSS 540
  541 SVGSNIFDIT VGLPLPWLLY AVINNFSPVT VSSNGLFCAI VLLFIMLLFV ILSIAFCKWR 600
  601 MNKFLGFLMF GLYFVFLIVS VLLEDKVIQC PVSI