YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50838834
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPVLLRVS VPRWERVARS AVCAAGILLS LYACHLEREK GRDLHYQALC DLSERVRCSA  60
   61 AITSRWGRGF GLLGSIFGKD SAINQSNSVF GLVFYILQML LGMTASAVAA LILMTSSIVS 120
  121 VVGSLYLAYI LYFVLKEFCI VCVITYLLNF ILFIINYKRL VYLNEAWKRQ LQPKQE

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.28
Transmembrane Helix	17	36	0.61
Cytoplasmic	37	93	0.48
Transmembrane Helix	94	128	0.71
Non-Cytoplasmic	129	132	0.38
Transmembrane Helix	133	157	0.81
Cytoplasmic	158	176	0.67