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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14009269, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.30
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALGFDDAA LEGLALELRA ASDIDTALLS DIDDMLQLIN TPDNDFSGLF DAPFAAPDST  60
   61 VSPGLPPAPT TYLGPSKPPP TGNVFPAPPV LPTFTPQPPA PLLPAPGPPA APGVKEEPVA 120
  121 VPSSQPQPGV MLTPSFVPAS PGQFSSQPVV GFQNQHSFPA VQPGGAAQSP LPTPQPAQPV 180
  181 ALPGPVQSVA PQQLLAPGPA ATTQPVSPQI QPVPVLLQPH FIKADSLLLT AVKTDAGGAK 240
  241 TSSITSLATS STAAPLQVPA LVSGGTILAT VPLVVDAEKL PINRLAPSGK AALLQSKGEK 300
  301 RTAHNAIEKR YRSSINDKIV ELKDLVVGTE AKLNKSAILR KAIEYIRFLQ QSNQKLKQEN 360
  361 LSLKMAVQKS KSLKDLVASC GAGPKAEASM EVAKAEVMEM PTPPPSDVGS PSRGSPLSLS 420
  421 GGSSNSSSDS EPDSPLCNHG KVKQENPPPS PGSQGMLDRS RMALCAFVFL CLSFNPLASL 480
  481 LRGSSAPAPS GSLGTAGPGR SIMAESGTAE EPWGWSQWLW PTLVFWGLNV ALVLGAVVRL 540
  541 FVYGEPVTPP HSESSVLFWR HRRQADLDLD RGDFAQGAQH LRTALGALGR PLPASHGDLA 600
  601 CSLLWSLLRH LLQRLWVGRW LAARAGGLRP DPPPRAHVRQ SARNAAMAYH RLHQLHLAGK 660
  661 QAGGHLLAIN LALSAVNLAE CAGDAVSVAA LAEIYVAAAL RVKASLHRCF HFLARPFLCS 720
  721 ARRVALSHGG AVPPAMQWLC HPLGHRFFVD GDWAVKGVPR ETIYSSAGDP VDPLAQVTQL 780
  781 FREHLLEKAL YCVAMPEPGR PAAQGEGCFS DALEYLQLLN GCSHASSMPG PMPSISSGLA 840
  841 AVTGTDPVSK WWASLIGTVI HWLKGDEEGA ERLYPLVEAM PRALQSSEKP LPRAALHSFK 900
  901 AVRAMLSKQD GSQASLSHCE KASSCLRESL ELCSPPKCTI DKAVQLLLCD LLLVTRTNLW 960
  961 QQQMSASQQL RGTYQASALE LRGFSRTSAS LRRLAQTLRP AMRRVFLHEA TARLMARASP1020
 1021 TRTHQLLDRS LRRRGVQGSK AAGEPESHPT PREHAEALLL ACCYLPPSFL SAPGQRVGML1080
 1081 AEAARTLEKL GDRRTLHDCQ QMIIKLGSGT TVTSG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle