YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39546561
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.93
Transmembrane Helix	35	55	0.93
Non-Cytoplasmic	56	71	0.87
Transmembrane Helix	72	94	0.88
Cytoplasmic	95	110	0.96
Transmembrane Helix	111	134	0.89
Non-Cytoplasmic	135	140	0.89
Transmembrane Helix	141	161	0.91
Cytoplasmic	162	167	0.88
Transmembrane Helix	168	190	0.87
Non-Cytoplasmic	191	214	0.85
Transmembrane Helix	215	234	0.92
Cytoplasmic	235	244	0.84
Transmembrane Helix	245	267	0.86
Non-Cytoplasmic	268	276	0.73
Transmembrane Helix	277	299	0.89
Cytoplasmic	300	338	0.91
Transmembrane Helix	339	362	0.65
Non-Cytoplasmic	363	369	0.71
Transmembrane Helix	370	394	0.84
Cytoplasmic	395	404	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDQKSENS VPSKVNMVNR TDILITIKSL SWLDLMLPFT IILSIIIAVI ISVYVPSSRH  60
   61 TFDAEGHPNL MGVSIPLTVG MIVMMIPPIC KVSWESIHKY FYKSYVRKQL ALSLFLNWVV 120
  121 GPLLMTALAW MALFDYKEYR QGIIMIGVAR CIAMVLIWNQ IAGGDNDLCV VLVITNSLLQ 180
  181 MVLYAPLQIF YCYVISHDHL NTSNRVLFEE VAKSVGVFLG IPLGIGITIR LASLTIVGKS 240
  241 NYEKYILRFI SPWATIGFHY TLFVIFISRG YQFIHEIGSA ILCFVPLVLY FFIAWFSTFA 300
  301 LMRYLSISRS DTQRECSCDQ ELLLKRVWGR KSCEASFSIT MTQCFTMASN NFELSLAIAI 360
  361 SLYGNNSKQA IAATFGPLLE VPILLILAIV ARILKPYYIW NNRN