YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190339606, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELRPWVPV GVAAGAPAGE RGGKRCSLRF CVVLGSLALL FITSLFFSFS LRGGAGLPYL  60
   61 EPPGWEESHR VKLVPSYAGS HRVIPAESAQ QKTCACSRCV GDPGVSDWFD ENYDPDISPV 120
  121 WIRDNIQLPS DVYYWWVMLQ PQFKPHNIQQ VLQRLFQVIP GRSPYGSWDP ARCLRCAVVG 180
  181 NSGNLRGAGY GPVIDGHDFI MRMNLAPTVG YEEDAGSRTT HHFMYPESAK NLAANVSFVL 240
  241 VPFKTLDLLW ITSALSTGQI RFTYAPVKQF LRVDKDKVQI FNPAFFKYIH DRWTRHHGRY 300
  301 PSTGMLVLFF ALHVCDEVNV FGFGADSRGN WHHYWEQNRY SGEFRKTGVH DADYEAQIID 360
  361 KLAKAGKISV FPGK

Type	Start	End	Confidence
Cytoplasmic	1	27	0.94
Transmembrane Helix	28	49	0.88
Non-Cytoplasmic	50	374	0.97