YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51571911, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTLKHLSVN DNEEDGVPLL PEASSLESPT AQHSRAESRD FFLSRRNNFI VSIVLLLSLY  60
   61 SALLVPAYLP TAEPIWTNES SAENLALLNQ SASLLSQSCH SGWSVERMRT MLSTPAGLLK 120
  121 IPVFLENGTG DWALPPPLGL QGSEEMAEQA LKALPFTAVP TGPETCRRCV VVGSRGILHS 180
  181 KNLGAHIDHA NIIIRVNNAP VFGFESDAGS RTTIRLIYPE GAPSHIQEYE RTEVVALVVF 240
  241 KSLDLAWMTS VVTKEPLVWW SKLWFWKDVI DSIPLQPENV RILNPEIMYR TGQVLQTYAE 300
  301 QQRKVMVPTL GITAVVVALQ VCDEVSIAGF GYDLQHPGAP LHYYGSLRMD AMKTQVVHDV 360
  361 SAETVFLKEL VKAGAVRDLT GAL

Type	Start	End	Confidence
Cytoplasmic	1	48	0.94
Transmembrane Helix	49	70	0.90
Non-Cytoplasmic	71	383	0.93