YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF5_XENTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFDNFNTD FYQTSYSIDD QSQGYNYNAG GAQHSKQYAY DPYSQQGGFI PPEMMNQQQP  60
   61 YTGQIYQPTQ TYTPAATDSV YGSTFDDEPP LLEELGINFD HIWQKTLTVL HPLKVADGNI 120
  121 MNETDLAGPM VFCLAFGATL LLAGKIQFGY VYGISAIGCL GMYCLLNLMS MTGVSFGCVS 180
  181 SVLGYCLLPM IILSSFAVIF SLQGILGIVL AALIIGWCSF SASKIFISAL AMDGQQVLVA 240
  241 YPCALLYGVF ALISVF

Type	Start	End	Confidence
Cytoplasmic	1	125	0.92
Transmembrane Helix	126	143	0.86
Non-Cytoplasmic	144	147	0.63
Transmembrane Helix	148	169	0.81
Cytoplasmic	170	175	0.55
Transmembrane Helix	176	200	0.79
Non-Cytoplasmic	201	204	0.49
Transmembrane Helix	205	227	0.82
Cytoplasmic	228	236	0.67
Transmembrane Helix	237	255	0.90
Non-Cytoplasmic	256	256	0.80