YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANTR4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.92
Transmembrane Helix	114	137	0.76
Non-Cytoplasmic	138	150	0.74
Transmembrane Helix	151	172	0.84
Cytoplasmic	173	178	0.83
Transmembrane Helix	179	199	0.92
Non-Cytoplasmic	200	205	0.82
Transmembrane Helix	206	228	0.87
Cytoplasmic	229	239	0.89
Transmembrane Helix	240	262	0.90
Non-Cytoplasmic	263	267	0.82
Transmembrane Helix	268	289	0.91
Cytoplasmic	290	339	0.96
Transmembrane Helix	340	362	0.89
Non-Cytoplasmic	363	375	0.89
Transmembrane Helix	376	400	0.83
Cytoplasmic	401	412	0.86
Transmembrane Helix	413	432	0.91
Non-Cytoplasmic	433	437	0.80
Transmembrane Helix	438	460	0.84
Cytoplasmic	461	469	0.83
Transmembrane Helix	470	493	0.90
Non-Cytoplasmic	494	499	0.75
Transmembrane Helix	500	521	0.90
Cytoplasmic	522	533	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCYSLSIQSS IDFHNRNALK IHGDRAILTS NLPTLRRIPF LPERDRRRKL VLCTGRVVNS  60
   61 LKFTGNTSVD LCGIPRHRLR VSCSDARRTP EETAAELTAQ PNFSEFITSE RVKVVAMLAL 120
  121 ALALCNADRV VMSVAIVPLS LSRGWSKSFS GIVQSSFLWG YLISPIAGGT LVDRYGGKVV 180
  181 MAWGVALWSL ATFLTPWAAD SSLWALLAAR AMVGVAEGVA LPCMNNMVAR WFPPTERSRA 240
  241 VGIAMAGFQL GNVVGLMLSP ILMSQGGIYG PFVIFGLSGF LWLLVWLSAT SSAPDRHPQI 300
  301 TKSELEYIKQ KKQISTMENK RISTSGIPPF GRLLSKMPTW AVIVANSMHS WGFFVILSWM 360
  361 PIYFNSVYHV NLKQAAWFSA VPWSMMAFTG YIAGFWSDLL IRRGTSITLT RKIMQSIGFI 420
  421 GPGIALIGLT TAKQPLVASA WLSLAVGLKS FSHLGFLINL QEIAPEYSGV LHGMCLTAGT 480
  481 LAAIVGTVGA GFFVELLGSF QGFILLTAIL YLLSALFYNI YATGERVDFD TTA