YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50927757, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAWSLHELW KTSHSTLFQV TLATVLMAPV LGDCGPPPSL PFASPISQLD EVSFPPGAVL  60
   61 KYTCHHGFKR TNSSHITCDE NGSWVYTTFC ARKRCKNPGE LVNGKIEILS DLLVGSNIEF 120
  121 SCSEGYLLIG SATSRCEVQG KGVNWSDSLP ECVKIVCHQP QIPKGELVPG FRHFHTYKDA 180
  181 LEIRCKKGFA LRGNSVIHCE ANGEWFPSVP TCEPNGCIDI PDISYASWDG NRFPLENTAV 240
  241 FEIGTKLKYR CKPGYRANVH DVQIVTCQEN LTWSSPSGCE RVCCPTPNME KIKIVSERRD 300
  301 FTGTCVYAYG DYVFYICSEG TYPMTTDGRS SCQADGKWDP AIPSCEADPS LQNHFALTFP 360
  361 NISETNVTNR TYLLENENAT ESFIKAVCPK PEIINGNLSV EKEIYAEMEN ITIQCDSGYD 420
  421 LVGSSNIICL ENRTWYPDIP FCIMEGPEDC EIVNKGRQLL QCLSSPEDVQ RALEVYKLSL 480
  481 EIERLEQQRE KRTSVHRKAH YTKVDGPFRP FS

Type	Start	End	Confidence
Signal Peptide	1	32	0.94
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	512	0.99