YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47575788, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSHHTVTT SDPHGGHHHP TTSGNHGDHG GSMHMMQMTF YFGYENVEVL FTGLVINSAG  60
   61 EMAGAFVAVF LLALLYEGLK ISREALLRKS QVSIRYNSMP VPGPNGTILM ETHKTVGQRM 120
  121 LSVPHLLQTL LHIIQVVVSY FLMLIFMTYN AYLCIAVAAG AGTGYFLFSW KKAVVVDITE 180
  181 HCH

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.69
Transmembrane Helix	50	79	0.72
Cytoplasmic	80	123	0.89
Transmembrane Helix	124	144	0.77
Non-Cytoplasmic	145	148	0.55
Transmembrane Helix	149	169	0.85
Cytoplasmic	170	183	0.76