YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMM27_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWALFFLVT TIHAELCRPD AENAFKVRLS IKAALGDKAY VWDTDEEYLF RAMVAFSMRK  60
   61 VPNREGTEIS HVLLCNVTQR VSFWFVVTDP LKNHTLPAAE VQSAIRMNRN RINSAFFLDD 120
  121 HTLEFLKIPS TLAPPMDPSV PVWIIVFGVI FCIVTVAIAL LVLSGIRQRR RNKKGPPGVE 180
  181 DAEDKCENII TIENGIPCDP LDMKGGHIND GFLTEDERLT PL

Type	Start	End	Confidence
Signal Peptide	1	14	0.89
N-region	1	5
H-region	6	11
C-region	12	14
Cleavage Site	14	15
Non-Cytoplasmic	15	141	0.96
Transmembrane Helix	142	164	0.95
Cytoplasmic	165	222	0.98