YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89268252, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMNYNAKEE DGHNHTSGVG PNLGKSKKPD NTAFKQQRLP AWQPILTAGT VLPAFFIIGI  60
   61 VFIPIGIGIF VTSNNIREFE IDYTGIDPSS PCYKCLNVTL NDPPCTCTIN FTLDYAFESN 120
  121 VFMYYGLSNF YQNHRRYVKS RDDSQLNGDK NSLTNPSKEC EPYRTNGSKP IAPCGAIANS 180
  181 MFNDTLVLYQ IVNGAEKQIP LVKKGIAWWT DKNVKFKNPT GNASNLEAVF AGTTKPINWK 240
  241 KPVYELDPSE PDNNGFINED FIVWMRTAAL PTFRKLYRLI EKTDATYPTL APGNYSLVVE 300
  301 YNYPVRSFDG RKRMILSTIS WMGGKNPFLG IAYITVGSIC FFLGVVLFVI HHKYGNRNNS 360
  361 ADIPN

Type	Start	End	Confidence
Cytoplasmic	1	44	0.62
Transmembrane Helix	45	71	0.84
Non-Cytoplasmic	72	328	0.61
Transmembrane Helix	329	351	0.92
Cytoplasmic	352	365	0.58