YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45361313, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAACLVLRR SLGGAVLQGG RAAWPVAPQA NMSFSTLSRG RKVALSTLGI LVAGGSGLAF  60
   61 ALHQSVKASE LELHPPSYPW SHNGLLSSLD HASIRRGYQV YKQVCAACHS MEYLAFRNLI 120
  121 GVSHTEAEAK ALAEEFEILD GPDENGEMFT RPGKLSDYFP KPYPNDEAAR ASNNGALPPD 180
  181 LSYIVNARHG GEDYVFSLLT GYCDPPAGVS LREGLYYNPY FPGQAVGMAP PIYNEVLEFD 240
  241 DGTPATMSQV AKDVCTFLRW ASEPEHDQRK RMGLKVLMIS SILIPLIYYM KRHRWSVLKS 300
  301 RKIAYRPPK

Type	Start	End	Confidence
Cytoplasmic	1	42	0.64
Transmembrane Helix	43	62	0.65
Non-Cytoplasmic	63	271	0.96
Transmembrane Helix	272	290	0.78
Cytoplasmic	291	309	0.75