YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	JAGN1_XENTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAGPRAT GTDGSDFQHR ERVASHYQMS ASLKNEIKKL IYAHLVIWLL IAAQMCVSHL  60
   61 KLVSKDLVAM PYQWEYPYLL SLVPSLFGLV SFPRNNISYL VISMISTGLF SIAPLIYGTL 120
  121 EMFPMAQQLY RHGKAYRFIF GFSAISVMYL LMVVAVQVHG WQIYYSKKLL DAWFTNTQEK 180
  181 KKK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.93
Transmembrane Helix	40	63	0.87
Non-Cytoplasmic	64	75	0.81
Transmembrane Helix	76	92	0.55
Cytoplasmic	93	96	0.44
Transmembrane Helix	97	120	0.87
Non-Cytoplasmic	121	137	0.47
Transmembrane Helix	138	161	0.87
Cytoplasmic	162	183	0.50