YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TRAM1_CANLF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRKKSTKS PPVLSHEFIL QNHADIVSCV AMVFLLGLMF EITAKASIIF VTLQYNVTLP  60
   61 ATEEQATEST SLYYYGIKDL ATVFFYMLVA IIIHAIIQEY VLDKINRRMH FSKTKHSKFN 120
  121 ESGQLSAFYL FSCIWGTFIL ISENYISDPT ILWRAYPHNL MTFQMKFFYI AQLAYWFHAF 180
  181 PELYFQKTKK EDIPRQLVYI GLYLFHIAGA YLLNLNHLGL VLLVLHYFVE FLFHISRLFY 240
  241 FSDEKYQKGF SLWAVLFVLG RLLTLILSVL TVGFGLARAE NQKLDFSAGN FNVLAVRIAV 300
  301 LASICITQAF MMWKFINFQL RRWREHSTFQ APVVKKKPTV TKGRSSRKGT ENGVNGTVTS 360
  361 NGADSPRNRK EKSS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	42	0.88
Non-Cytoplasmic	43	81	0.91
Transmembrane Helix	82	102	0.95
Cytoplasmic	103	122	0.94
Transmembrane Helix	123	142	0.93
Non-Cytoplasmic	143	161	0.85
Transmembrane Helix	162	180	0.84
Cytoplasmic	181	195	0.77
Transmembrane Helix	196	215	0.87
Non-Cytoplasmic	216	221	0.65
Transmembrane Helix	222	241	0.89
Cytoplasmic	242	251	0.85
Transmembrane Helix	252	274	0.90
Non-Cytoplasmic	275	292	0.87
Transmembrane Helix	293	316	0.90
Cytoplasmic	317	374	0.96